PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001938G0330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 261aa    MW: 28522.2 Da    PI: 9.0364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001938G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-1790140255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GVr ++ +g+++AeIrd    + k +r++lg+fgt+e Aa a+++a+ + +g
  PH01001938G0330  90 GFIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFGTPEAAAMAYDQAAFSVRG 140
                      899******.**********32..2.24**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.36E-1789150No hitNo description
SuperFamilySSF541718.5E-2190149IPR016177DNA-binding domain
PROSITE profilePS5103221.65490148IPR001471AP2/ERF domain
SMARTSM003806.9E-3190154IPR001471AP2/ERF domain
PfamPF008474.7E-1390140IPR001471AP2/ERF domain
PRINTSPR003675.8E-891102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2791148IPR001471AP2/ERF domain
PRINTSPR003675.8E-8114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEQACYSSST ATAMNMMIPL PPAPDDHHHR CLDTTTNEDM RILNTLLLEM DTEAAPSDRS  60
SDSSTSSSSH QLRASPKRRH HQHQHQSIKG FIGVRKRPWG KFAAEIRDST RKGARVWLGT  120
FGTPEAAAMA YDQAAFSVRG AAAVLNFPID RVQESLRTLA LGAARGSPVL ALKRRHSIRK  180
RSPNKNKKTT NHRQQLAAIK EAVAVPQPPC PGVVELEDLG ADYLEELLRV SETESSSTDH  240
LQHLATSCTA AANFNSLAHC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2389149161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A9e-2389149464ATERF1
2gcc_A9e-2389149464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757985.12e-63PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotQ8LDC84e-46ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLI1IT651e-64I1IT65_BRADI; Uncharacterized protein
TrEMBLM7ZJD62e-64M7ZJD6_TRIUA; Ethylene-responsive transcription factor 1B
STRINGBRADI4G38930.14e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-47ethylene response factor 1